Multi-omics approach reveals post-transcriptionally regulated genes are essential for human pluripotent stem cells

• 資料種別: 記事
• タイトル: Multi-omics approach reveals post-transcriptionally regulated genes are essential for human pluripotent stem cells
• 著者標目: 岩崎, 未央; https://orcid.org/0000-0003-2085-732X; 川原, 優香; 大久保, 周子; 山川, 達也; https://orcid.org/0009-0004-3986-8613; 中村, 美千子; 田畑, 剛; 西, 洋平; 成田, 恵; 太田, 章; 齊藤, 博英; 山本, 拓也; https://ci.nii.ac.jp/author/DA13697920; 中川, 誠人; https://ci.nii.ac.jp/author/DA1845232X; 山中, 伸弥; https://ci.nii.ac.jp/author/DA16263530; 高橋, 和利
• 出版年月日等: 2022-05
• 出版年（W3CDTF）: 2022-05
• 寄与者: 岩崎, 未央; 川原, 優香; 大久保, 周子; 山川, 達也; 中村, 美千子; 田畑, 剛; 西, 洋平; 成田, 恵; 太田, 章; 齊藤, 博英; 山本, 拓也; 中川, 誠人; 山中, 伸弥; 高橋, 和利; 10722811; 20961197; 20423014; 60546993; 10379539; 10295694
• タイトル（掲載誌）: iScience
• 巻号年月日等（掲載誌）: 25 5
• 掲載巻: 25
• 掲載号: 5
• 掲載ページ: 104289-
• 掲載年月日（W3CDTF）: 2022-05
• ISSN（掲載誌）: 25890042
• 出版事項（掲載誌）: Elsevier BV
• 本文の言語コード: en
• 件名標目: Biological sciences; Stem cells research; Omics
• 対象利用者: 一般
• 標準番号（その他）: PMID : 35573189
• DOI: 10.1016/j.isci.2022.104289; https://doi.org/10.1016/j.isci.2022.104289
• オンライン閲覧公開範囲: インターネット公開
• 著作権情報: © 2022 The Authors.; This is an open access article under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International license.
• 関連情報（URI）: http://hdl.handle.net/2433/270024; https://api.elsevier.com/content/article/PII:S2589004222005594?httpAccept=text/xml; https://api.elsevier.com/content/article/PII:S2589004222005594?httpAccept=text/plain
• 参照: Elucidation of adipogenic differentiation regulatory mechanism in human maxillary/mandibular bone marrow-derived stem cells; https://cir.nii.ac.jp/crid/1360017280643777152; EIF3D safeguards the homeostasis of key signaling pathways in human primed pluripotency; https://cir.nii.ac.jp/crid/1360025430627675136; Selective Translation Orchestrates Key Signaling Pathways in Primed Pluripotency; https://cir.nii.ac.jp/crid/1360584340702192512
• 参照: RNA structure-wide discovery of functional interactions with multiplexed RNA motif library; https://cir.nii.ac.jp/crid/1050006210079899776; Differentiation-defective phenotypes revealed by large-scale analyses of human pluripotent stem cells.; https://cir.nii.ac.jp/crid/1050564285731407872; A novel efficient feeder-free culture system for the derivation of human induced pluripotent stem cells [in English]; https://cir.nii.ac.jp/crid/1050564285734053760; Global Splicing Pattern Reversion during Somatic Cell Reprogramming; https://cir.nii.ac.jp/crid/1050845760708075008; jPOSTTrepo: an international standard data repository for proteome; https://cir.nii.ac.jp/crid/1050845760781999488; Involvement of posttranscriptional regulation of <i>Clock</i> in the emergence of circadian clock oscillation during mouse development; https://cir.nii.ac.jp/crid/1360002217134599296; Translational Control during Developmental Transitions; https://cir.nii.ac.jp/crid/1360011143802036608; Cellular quality control by the ubiquitin-proteasome system and autophagy; https://cir.nii.ac.jp/crid/1360011144377190784; Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation; https://cir.nii.ac.jp/crid/1360011144849763456; CLIP Identifies Nova-Regulated RNA Networks in the Brain; https://cir.nii.ac.jp/crid/1360011146022256128; Systems-level dynamic analyses of fate change in murine embryonic stem cells; https://cir.nii.ac.jp/crid/1360011146330619904; mRNAs, proteins and the emerging principles of gene expression control; https://cir.nii.ac.jp/crid/1360013171327698560; Gene- and Species-Specific Hox mRNA Translation by Ribosome Expansion Segments; https://cir.nii.ac.jp/crid/1360017286879579136; Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells; https://cir.nii.ac.jp/crid/1360017289477874432; RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome; https://cir.nii.ac.jp/crid/1360292617910769280; Cutadapt removes adapter sequences from high-throughput sequencing reads; https://cir.nii.ac.jp/crid/1360292617917356672; A brave new world of RNA-binding proteins; https://cir.nii.ac.jp/crid/1360292617917828992; Ribosome biogenesis in cancer: new players and therapeutic avenues; https://cir.nii.ac.jp/crid/1360292618872593920; mRNA structure regulates protein expression through changes in functional half-life; https://cir.nii.ac.jp/crid/1360292620105572736; Coupling mRNA processing with transcription in time and space; https://cir.nii.ac.jp/crid/1360292620918736384; RNA lifetime control, from stereochemistry to gene expression; https://cir.nii.ac.jp/crid/1360298760299947904; A transcriptome-wide antitermination mechanism sustaining identity of embryonic stem cells; https://cir.nii.ac.jp/crid/1360298760300147456; The discovery of polyribosomes; https://cir.nii.ac.jp/crid/1360298760425717376; Monosomes actively translate synaptic mRNAs in neuronal processes; https://cir.nii.ac.jp/crid/1360298765169808896; RBPmap: a web server for mapping binding sites of RNA-binding proteins; https://cir.nii.ac.jp/crid/1360574092885597824; Fast gapped-read alignment with Bowtie 2; https://cir.nii.ac.jp/crid/1360574092886317824; Global Positioning System: Understanding Long Noncoding RNAs through Subcellular Localization; https://cir.nii.ac.jp/crid/1360574095649979392; Post-transcriptional regulation of the pluripotent state; https://cir.nii.ac.jp/crid/1360576121081500544; Critical Roles of Translation Initiation and RNA Uridylation in Endogenous Retroviral Expression and Neural Differentiation in Pluripotent Stem Cells; https://cir.nii.ac.jp/crid/1360576121815741312; Ribosome states signal RNA quality control; https://cir.nii.ac.jp/crid/1360580235949042816; Integrated genomic analysis reveals key features of long undecoded transcript isoform-based gene repression; https://cir.nii.ac.jp/crid/1360580236822870144; A large-scale targeted proteomics assay resource based on an in vitro human proteome; https://cir.nii.ac.jp/crid/1360846641739797120; STAR: ultrafast universal RNA-seq aligner; https://cir.nii.ac.jp/crid/1360855567860394624; The Sequence Alignment/Map format and SAMtools; https://cir.nii.ac.jp/crid/1360855567866476544; Mechanism of ribosome stalling during translation of a poly(A) tail; https://cir.nii.ac.jp/crid/1360855569920450176; eIF3d is an mRNA cap-binding protein that is required for specialized translation initiation; https://cir.nii.ac.jp/crid/1360855571348288128; Ensembl 2021; https://cir.nii.ac.jp/crid/1360855886954905600; Gene Architecture and Sequence Composition Underpin Selective Dependency of Nuclear Export of Long RNAs on NXF1 and the TREX Complex; https://cir.nii.ac.jp/crid/1360861712127340160; Stop and Go Extraction Tips for Matrix-Assisted Laser Desorption/Ionization, Nanoelectrospray, and LC/MS Sample Pretreatment in Proteomics; https://cir.nii.ac.jp/crid/1361418518701196928; MBNL proteins repress ES-cell-specific alternative splicing and reprogramming; https://cir.nii.ac.jp/crid/1361418521474325248; Removal of Interference MS/MS Spectra for Accurate Quantification in Isobaric Tag-Based Proteomics; https://cir.nii.ac.jp/crid/1361694367864221952; The TargetMine Data Warehouse: Enhancement and Updates; https://cir.nii.ac.jp/crid/1361694594108403584; Embryonic Stem Cell Lines Derived from Human Blastocysts; https://cir.nii.ac.jp/crid/1361699993428243584; Sequence Determinants for Nuclear Retention and Cytoplasmic Export of mRNAs and lncRNAs; https://cir.nii.ac.jp/crid/1361699993921055360; Translational Control through Differential Ribosome Pausing during Amino Acid Limitation in Mammalian Cells; https://cir.nii.ac.jp/crid/1362262943435522176; An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming; https://cir.nii.ac.jp/crid/1362262944950313600; A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity; https://cir.nii.ac.jp/crid/1362825894045228160; Induced Pluripotent Stem Cells: Past, Present, and Future; https://cir.nii.ac.jp/crid/1362825894279072768; RSeQC: quality control of RNA-seq experiments; https://cir.nii.ac.jp/crid/1363107371267987200; Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures; https://cir.nii.ac.jp/crid/1363388844156527872; A deep proteome and transcriptome abundance atlas of 29 healthy human tissues; https://cir.nii.ac.jp/crid/1363388844839159680; Induction of pluripotent stem cells from adult human fibroblasts by defined factors [in English]; https://cir.nii.ac.jp/crid/1571135650908211456; Critical roles of translation initiation and RNA uridylation in endogenous retroviral expression and neural differentiation in pluripotent stem cells; https://cir.nii.ac.jp/crid/1884242817248318208
• 連携機関・データベース: 国立情報学研究所 : CiNii Research; https://cir.nii.ac.jp/
• 提供元機関・データベース: 学術機関リポジトリデータベース; https://irdb.nii.ac.jp; Crossref; https://www.crossref.org; 科学研究費助成事業データベース; https://kaken.nii.ac.jp/ja

• 要約等: The effects of transcription factors on the maintenance and differentiation of human-induced or embryonic pluripotent stem cells (iPSCs/ESCs) have bee...