Comparative Analyses of the White-lipped Tree Frog, Polypedates leucomystax, Using Mitochondrial Genomes

• 資料種別: 記事
• タイトル: Comparative Analyses of the White-lipped Tree Frog, Polypedates leucomystax, Using Mitochondrial Genomes
• 著者・編者: HIDETOSHI INAGAKI; YOSHIKAZU HARAMOTO; TOMOYA KINUMI; ATSUSHI TOMINAGA; NIAN-HONG JANG-LIAW; YASUSHI SHIGERI
• 著者標目: HIDETOSHI INAGAKI; YOSHIKAZU HARAMOTO; TOMOYA KINUMI; ATSUSHI TOMINAGA; NIAN-HONG JANG-LIAW; YASUSHI SHIGERI
• タイトル（掲載誌）: Current Herpetology
• 巻号年月日等（掲載誌）: 44(2):2025.8
• 掲載巻: 44
• 掲載号: 2
• 掲載ページ: 124-132
• 掲載年月日（W3CDTF）: 2025-08
• ISSN（掲載誌）: 1345-5834
• ISSN-L（掲載誌）: 1345-5834
• 出版事項（掲載誌）: Kyoto : Herpetological Society of Japan
• 出版地（国名コード）: JP
• 本文の言語コード: eng
• 件名標目: D-loop; Mitochondrial genome; Polypedates; Repetitive sequence region
• NDLC: ZR4
• 対象利用者: 一般
• 所蔵機関: 国立国会図書館
• 請求記号: Z54-J527
• 連携機関・データベース: 国立国会図書館 : 国立国会図書館雑誌記事索引; https://ndlsearch.ndl.go.jp
• 書誌ID（NDLBibID）: 034280299; http://id.ndl.go.jp/bib/034280299
• 整理区分コード: 632

• 要約等: <p>We determined the complete mitochondrial genome sequence of the White-lipped Tree Frog, <i>Polypedates leucomystax</i>, in Okinawa, Japan, from a single individual. The mitochondrial genome encoded 13 protein-coding genes, two rRNAs, 22 tRNAs, and two control regions (D-loops). When compared using full-length mitochondrial genome sequences, our mitochondrial genome is most similar to that of <i>P. leucomystax</i> from Thailand (94.5%). From the phylogenetic analysis of partial mitochondrial genome sequences, <i>P. leucomystax</i> was divided into three subgroups: western (Myanmar), central (Malaysia and Thailand), and central/eastern (Indonesia, Philippines, and Japan). The mitochondrial genome sequences from the Okinawa and Thailand frogs were representative sequences of central/eastern and central subgroups, respectively. In spite of the high similarity between the Okinawa and Thailand frogs’ mitochondrial genome sequences, we found a difference in length and the sequence in the second D-loop. In this region, we found a repetitive sequence region, which was composed of an 86-bp sequence with 13- and 14-bp spacer sequences. The repetitive sequence regions were different in length, copy number, the combination of the 86-bp, and the spacer sequences among eight individuals of <i>P. leucomystax</i> in Okinawa, Japan.</p>
• DOI: 10.5358/hsj.44.124
• オンライン閲覧公開範囲: インターネット公開
• 連携機関・データベース: 科学技術振興機構 : J-STAGE; http://www.jstage.jst.go.jp

• 要約等: <p>We determined the complete mitochondrial genome sequence of the White-lipped Tree Frog, <i>Polypedates leucomystax</i>, in Okinawa, Japan, from a single individual. The mitochondrial genome encoded 13 protein-coding genes, two rRNAs, 22 tRNAs, and two control regions (D-loops). When compared using full-length mitochondrial genome sequences, our mitochondrial genome is most similar to that of <i>P. leucomystax</i> from Thailand (94.5%). From the phylogenetic analysis of partial mitochondrial genome sequences, <i>P. leucomystax</i> was divided into three subgroups: western (Myanmar), central (Malaysia and Thailand), and central/eastern (Indonesia, Philippines, and Japan). The mitochondrial genome sequences from the Okinawa and Thailand frogs were representative sequences of central/eastern and central subgroups, respectively. In spite of the high similarity between the Okinawa and Thailand frogs’ mitochondrial genome sequences, we found a difference in length and the sequence in the second D-loop. In this region, we found a repetitive sequence region, which was composed of an 86-bp sequence with 13- and 14-bp spacer sequences. The repetitive sequence regions were different in length, copy number, the combination of the 86-bp, and the spacer sequences among eight individuals of <i>P. leucomystax</i> in Okinawa, Japan.</p>
• DOI: 10.5358/hsj.44.124; https://doi.org/10.5358/hsj.44.124
• 関連情報（URI）: http://id.ndl.go.jp/bib/034280299; https://ndlsearch.ndl.go.jp/books/R000000004-I034280299
• 参照: MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms; https://cir.nii.ac.jp/crid/1360011142932984576; Two-Fold ND5 Genes, Three-Fold Control Regions, lncRNA, and the “Missing” ATP8 Found in the Mitogenomes of Polypedates megacephalus (Rhacophridae: Polypedates); https://cir.nii.ac.jp/crid/1360024023315276416; Phylogenetic and taxonomic relationships of the <i>Polypedates leucomystax</i> complex (Amphibia); https://cir.nii.ac.jp/crid/1360285710601521024; A reduction of mitochondrial DNA molecules during embryogenesis explains the rapid segregation of genotypes; https://cir.nii.ac.jp/crid/1360292620736611968; Trimmomatic: a flexible trimmer for Illumina sequence data; https://cir.nii.ac.jp/crid/1360574092884632576; Mitochondrial DNA Purifying Selection in Mammals and Invertebrates; https://cir.nii.ac.jp/crid/1360868447085876864; New evidence for parallel evolution of colour patterns in Malagasy poison frogs (<i>Mantella</i>); https://cir.nii.ac.jp/crid/1360868447459901696; Replication And Transcription Of Vertebrate Mitochondrial Dna; https://cir.nii.ac.jp/crid/1360868451630169856; Velvet: Algorithms for de novo short read assembly using de Bruijn graphs; https://cir.nii.ac.jp/crid/1362544420451982848; Mitochondrial DNA variable number tandem repeats (VNTRs): utility and problems in molecular ecology; https://cir.nii.ac.jp/crid/1363107370653968640; MITOS: Improved de novo metazoan mitochondrial genome annotation; https://cir.nii.ac.jp/crid/1364233268515187328
• 連携機関・データベース: 国立情報学研究所 : CiNii Research; https://cir.nii.ac.jp/
• 提供元機関・データベース: Japan Link Center; https://japanlinkcenter.org/top; 雑誌記事索引データベース; https://ndlsearch.ndl.go.jp; Crossref; https://www.crossref.org
• 書誌ID（NDLBibID）: 034280299; http://id.ndl.go.jp/bib/034280299