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CiNii Research
GNRA/receptor interacting modules: Versatile modular units for natural and artificial RNA architectures
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デジタル
- 資料種別
- 記事
- 出版年月日等
- 2011-06
- 出版年(W3CDTF)
- 2011-06
- タイトル(掲載誌)
- Methods
- 巻号年月日等(掲載誌)
- 54 2
- 掲載巻
- 54
- 掲載号
- 2
- 掲載ページ
- 226-238
- 掲載年月日(W3CDTF)
- 2011-06
- ISSN(掲載誌)
- 10462023
- 出版事項(掲載誌)
- Elsevier BV
- 対象利用者
- 一般
- DOI
- 10.1016/j.ymeth.2010.12.011
- 作成日(W3CDTF)
- 2010-12-15
- 著作権情報
- https://www.elsevier.com/tdm/userlicense/1.0/
- 関連情報(URI)
- 参照
- An RNA Triangle with Six Ribozyme Units Can Promote a Trans-Splicing Reaction through Trimerization of Unit Ribozyme DimersSelf-Replication Reactions Dependent on Tertiary Interaction Motifs in an RNA Ligase RibozymeCharacterization of an RNA receptor motif that recognizes a GCGA tetraloopRNA Tectonics (<scp>tectoRNA</scp>) for <scp>RNA</scp> nanostructure design and its application in synthetic biologyTecto‐GIRz: Engineered Group I Ribozyme the Catalytic Ability of Which Can Be Controlled by Self‐DimerizationTectoRNP: self‐assembling RNAs with peptide recognition motifs as templates for chemical peptide ligationArtificial RNA Motifs Expand the Programmable Assembly between RNA Modules of a Bimolecular Ribozyme Leading to Application to RNA Nanostructure DesignOptimization of RNA-based c-di-GMP fluorescent sensors through tuning their structural modulesFunctional roles of a tetraloop/receptor interacting module in a cyclic di-GMP riboswitch
- 参照
- RNA tectonics: towards RNA designControl of protein synthesis and mRNA degradation by microRNAsRiboswitches that sense <i>S</i>-adenosylmethionine and <i>S</i>-adenosylhomocysteineThis paper is one of a selection of papers published in this Special Issue, entitled CSBMCB — Systems and Chemical Biology, and has undergone the Journal's usual peer review process.Multiple tertiary interactions involving domain II of group II self-splicing introns 1 1Edited by M. YanivDesigned RNAs with Two Peptide‐Binding Units as Artificial Templates for Native Chemical Ligation of RNA‐Binding PeptidesSequence and Structural Conservation in RNA Ribose ZippersG-ribo: A new structural motif in ribosomal RNACrystal structure of a self-splicing group I intron with both exonsA general module for RNA crystallizationA polyhedron made of tRNAsBiochemical characterization of the kink-turn RNA motifGeneration and Development of RNA Ligase Ribozymes with Modular Architecture Through “Design and Selection”Assembly Mechanism of the Sixty-Subunit Nanoparticles <i>via</i> Interaction of RNA with the Reengineered Protein Connector of phi29 DNA-Packaging MotorA Small Structural Element, Pc-J5/5a, Plays Dual Roles in a Group IC1 Intron RNACrystal structure of the specificity domain of ribonuclease PNiche partitioning in the coevolution of 2 distinct RNA enzymesSolution structure of a GAAA tetraloop receptor RNARNA folding: Pseudoknots, loops and bulgesControlling RNA self-assembly to form filamentsStructural Insights into Group II Intron Catalysis and Branch-Site SelectionComprehensive features of natural and in vitro selected GNRA tetraloop-binding receptorsEvaluation of specific delivery of chimeric phi29 pRNA/siRNA nanoparticles to multiple tumor cellsSelection of a novel class of RNA–RNA interaction motifs based on the ligase ribozyme with defined modular architectureA specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptorStructural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA LoopsRational optimization of the DSL ligase ribozyme with GNRA/receptor interacting modulesTranslocation of double-stranded DNA through membrane-adapted phi29 motor protein nanoporesSpecific Delivery of Therapeutic RNAs to Cancer Cells via the Dimerization Mechanism of phi29 Motor pRNAPutative intermediary stages for the molecular evolution from a ribozyme to a catalytic RNPDesign, Construction, and Analysis of a Novel Class of Self-Folding RNAIn Vitro Selection of Functional Nucleic AcidsFrequent occurrence of the T-loop RNA folding motif in ribosomal RNAsMutation analysis of the base-pair connecting two functional modules in the DSL ribozymeNon–coding RNA genes and the modern RNA worldConstruction and Characterization of a Gold Nanoparticle Wire Assembled Using Mg<sup>2+</sup>-Dependent RNA−RNA InteractionsIn vitro selection of RNAs with increased tertiary structure stabilityCrystal structure of the RNA component of bacterial ribonuclease PA universal mode of helix packing in RNAConstruction of Bacteriophage Phi29 DNA Packaging Motor and its Applications in Nanotechnology and TherapyModelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysisTertiary Motifs in RNA Structure and FoldingThe kink-turn: a new RNA secondary structure motifThe emerging field of RNA nanotechnologyEvolutionary optimization of a modular ligase ribozyme: a small catalytic unit and a hairpin motif masking an element that could form an inactive structureMonovalent and Divalent Promoted GAAA Tetraloop-Receptor Tertiary Interactions from Freely Diffusing Single-Molecule Studies<i>De novo</i> synthesis and development of an RNA enzymeInter-RNA Interaction of Phage φ29 pRNA to Form a Hexameric Complex for Viral DNA TransportationArchitecture of ribosomal RNA: constraints on the sequence of "tetra-loops".miRNAs Get an Early Start on Translational SilencingRibozymesA designed RNA selection: establishment of a stable complex between a target and selectant RNA via two coordinated interactionsRules for RNA recognition of GNRA tetraloops deduced by invitro selection: comparison with invivo evolutionStructural basis of ligand binding by a c-di-GMP riboswitchA widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolismStructural and biochemical characterization of DSL ribozymeRecognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitchRNA loop–loop interactions as dynamic functional motifsRemarkable morphological variability of a common RNA folding motif: the GNRATetraloop-receptor interactionGAAA Tetraloop and Conserved Bulge Stabilize Tertiary Structure of a Group I Intron DomainRiboswitches in Eubacteria Sense the Second Messenger Cyclic Di-GMPA conserved motif in group IC3 introns is a new class of GNRA receptorRedesign of an Artificial Ligase Ribozyme Based on the Analysis of Its Structural ElementsReconstitution of a group I intron self-splicing reaction with an activator RNA.Building Programmable Jigsaw Puzzles with RNARole of metal ions in the tetraloop–receptor complex as analyzed by NMRThermodynamic Stability of the P4−P6 Domain RNA Tertiary Structure Measured by Temperature Gradient Gel ElectrophoresisQuantitative Analysis of the Isolated GAAA Tetraloop/Receptor Interaction in Solution: A Site-Directed Spin Labeling StudyRNA Nanotechnology: Engineering, Assembly and Applications in Detection, Gene Delivery and TherapyAssembly of an Exceptionally Stable RNA Tertiary Interface in a Group I RibozymeCrystal Structure of a Group I Ribozyme Domain: Principles of RNA PackingEmergence of a fast-reacting ribozyme that is capable of undergoing continuous evolutionRNA Tertiary Structure Mediation by Adenosine PlatformsModular Construction of a Tertiary RNA Structure: The Specificity Domain of the <i>Bacillus subtilis</i> RNase P RNAStructure–function relationships in RNA and RNP enzymes: Recent advancesCoordinated control of a designed <i>trans</i>‐acting ligase ribozyme by a loop–receptor interactionChance and Necessity in the Selection of Nucleic Acid CatalystsSolution structure of P22 transcriptional antitermination N peptide–box B RNA complexRNA tertiary interactions in the large ribosomal subunit: The A-minor motifInvolvement of a GNRA tetraloop in long-range RNA tertiary interactionsEnergetics and Cooperativity of Tertiary Hydrogen Bonds in RNA StructureRational installation of an allosteric effector on a designed ribozymeRNA structural motifs: building blocks of a modular biomoleculeThe GAAA Tetraloop−Receptor Interaction Contributes Differentially to Folding Thermodynamics and Kinetics for the P4−P6 RNA DomainA Comparative Study on Two GNRA-Tetraloop Receptors: 11-nt and IC3 MotifsNMR Structure of the Bacteriophage λ N Peptide/boxB RNA Complex: Recognition of a GNRA Fold by an Arginine-Rich MotifDimerization of the 3′UTR of bicoid mRNA involves a two-step mechanismEnthalpy-Driven RNA Folding: Single-Molecule Thermodynamics of Tetraloop−Receptor Tertiary InteractionDocking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRETThermodynamics and Folding Pathway of Tetraloop Receptor-Mediated RNA Helical PackingRiboswitches: small-molecule recognition by gene regulatory RNAsCommon and distinctive features of GNRA tetraloops based on a GUAA tetraloop structure at 1.4 Å resolutionTectoRNA: modular assembly units for the construction of RNA nano-objectsTecto-RNA: One-Dimensional Self-Assembly through Tertiary InteractionsSynthetic translational regulation by an L7Ae–kink-turn RNP switchA Network of Heterogeneous Hydrogen Bonds in GNRA TetraloopsFrequent use of the same tertiary motif by self-folding RNAs.Generating New Specific RNA Interaction Interfaces Using C-LoopsRNA Helical Packing in Solution: NMR Structure of a 30kDa GAAA Tetraloop–Receptor ComplexThe building blocks and motifs of RNA architectureSite-directed Spin Labeling Studies Reveal Solution Conformational Changes in a GAAA Tetraloop Receptor upon Mg2+-dependent Docking of a GAAA TetraloopThe UA_handle: a versatile submotif in stable RNA architectures†Analysis of RNA motifsRNA Structure: Reading the RibosomeTailoring RNA modular units on a common scaffold: A modular ribozyme with a catalytic unit for β-nicotinamide mononucleotide-activated RNA ligationThe<i>trans</i>DSL Ligase Ribozyme Can Utilize Various Forms of Modules to Clamp Its Substrate and Enzyme UnitsOn the road to reading the RNA-interference code
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