Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics
A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i>-mers
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Genomic variation in 3,010 diverse accessions of Asian cultivated rice
OryzaGenome: Genome Diversity Database of Wild<i>Oryza</i>Species
Trimmomatic: a flexible trimmer for Illumina sequence data
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
Oryzabase. An Integrated Biological and Genome Information Database for Rice
Fast and accurate long-read alignment with Burrows–Wheeler transform
A map of rice genome variation reveals the origin of cultivated rice
The Oryza Map Alignment Project (OMAP): A New Resource for Comparative Genome Studies within Oryza
Evolution and diversity of the wild rice Oryza officinalis complex, across continents genome types, and ploidy levels
Gene Nomenclature System for Rice
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Rapid and Accurate Haplotype Phasing and Missing-Data Inference for Whole-Genome Association Studies By Use of Localized Haplotype Clustering
The TIGR Rice Genome Annotation Resource: improvements and new features
GenomeScope: fast reference-free genome profiling from short reads
TASUKE+: a web-based platform for exploring GWAS results and large-scale resequencing data
SNP-Seek database of SNPs derived from 3000 rice genomes
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
The wild Oryza collection in National BioResource Project (NBRP) of Japan: History, biodiversity and utility
Deletion in a gene associated with grain size increased yields during rice domestication