Pain induces stable, active microcircuits in the somatosensory cortex that provide a therapeutic target
Ultrafast optogenetic control
Structural basis for Na+ transport mechanism by a light-driven Na+ pump
Conversion of Channelrhodopsin into a Light-Gated Chloride Channel
Structural mechanisms of selectivity and gating in anion channelrhodopsins
Remote control of neural function by X-ray-induced scintillation
Highly accurate protein structure prediction for the human proteome
No evidence that carotenoid pigments boost either immune or antioxidant defenses in a songbird
An Essential Membrane Protein Modulates the Proteolysis of LpxC to Control Lipopolysaccharide Synthesis in Escherichia coli
Microbial and Animal Rhodopsins: Structures, Functions, and Molecular Mechanisms
Crystal structure of the channelrhodopsin light-gated cation channel
Highly accurate protein structure prediction with AlphaFold
<i>MolProbity</i>: all-atom structure validation for macromolecular crystallography
lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests
UCSF Chimera—A visualization system for exploratory research and analysis
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
Long-Time-Step Molecular Dynamics through Hydrogen Mass Repartitioning
Cross-protomer interaction with the photoactive site in oligomeric proteorhodopsin complexes
Cryo-EM single particle structure refinement and map calculation using<i>Servalcat</i>
Crystal structure of the natural anion-conducting channelrhodopsin GtACR1
<i>Coot</i>: model-building tools for molecular graphics
Deep brain optogenetics without intracranial surgery
Biodiversity on the Rocks: Macrofauna Inhabiting Authigenic Carbonate at Costa Rica Methane Seeps
PROMALS3D: a tool for multiple protein sequence and structure alignments
Expanding the optogenetics toolkit
Structure of the Light-Driven Chloride Pump Halorhodopsin at 1.8 Å Resolution
Channelrhodopsin-2, a directly light-gated cation-selective membrane channel
CHARMM36m: an improved force field for folded and intrinsically disordered proteins
Structure–Function Relationship of Channelrhodopsins
Mitigating local over-fitting during single particle reconstruction with SIDESPLITTER
Cortical layer–specific critical dynamics triggering perception
In situ click chemistry generation of cyclooxygenase-2 inhibitors
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Highly confined ions store charge more efficiently in supercapacitors
A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis
Fluorescence-Detection Size-Exclusion Chromatography for Precrystallization Screening of Integral Membrane Proteins
Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore
Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in <i>RELION</i>-3.1
Self-Assembly of Discoidal Phospholipid Bilayer Nanoparticles with Membrane Scaffold Proteins
Finite representation of an infinite bulk system: Solvent boundary potential for computer simulations
Biophysics of rhodopsins and optogenetics
Simultaneous monitoring of light-induced changes in protein side-group protonation, chromophore isomerization, and backbone motion of bacteriorhodopsin by time-resolved Fourier-transform infrared spectroscopy.
On retention of chromophore configuration of rhodopsin isomers derived from three dicis retinal isomers
Independent optical excitation of distinct neural populations
PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data
VMD: Visual molecular dynamics
The form and function of channelrhodopsin
Design of a light-gated proton channel based on the crystal structure of
<i>Coccomyxa</i>
rhodopsin
Nanodiscs for structural and functional studies of membrane proteins
Clustal Omega
New tools for automated high-resolution cryo-EM structure determination in RELION-3
Structural insights into ion conduction by channelrhodopsin 2
X-ray Structure of Bacteriorhodopsin at 2.5 Angstroms from Microcrystals Grown in Lipidic Cubic Phases
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
Electrostatics of nanosystems: Application to microtubules and the ribosome
Structure-Guided Transformation of Channelrhodopsin into a Light-Activated Chloride Channel
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Bacteriorhodopsin-like channelrhodopsins: Alternative mechanism for control of cation conductance
Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction
Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity
Channelrhodopsin-1: A Light-Gated Proton Channel in Green Algae
Structurally Distinct Cation Channelrhodopsins from Cryptophyte Algae
Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types
Deciphering key features in protein structures with the new ENDscript server
Transient protonation changes in channelrhodopsin-2 and their relevance to channel gating
<i>REFMAC</i>5 for the refinement of macromolecular crystal structures
Optogenetics: 10 years of microbial opsins in neuroscience
Engineered Passive Potassium Conductance in the KR2 Sodium Pump
Molecular properties of a DTD channelrhodopsin from Guillardia theta
Microbial rhodopsins: wide distribution, rich diversity and great potential