Structure of heme-binding pocket in heme protein is generally rigid and can be predicted by AlphaFold2
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- 資料種別
- 記事
- 著者・編者
- Hiroko X. KondoYusuke KanematsuYu Takano
- 出版年月日等
- 2022-05-11
- 出版年（W3CDTF）
- 2022-05-11
- タイトル（掲載誌）
- Chemistry letters
- 巻号年月日等（掲載誌）
- 51(7)
- 掲載巻
- 51(7)
- ISSN（掲載誌）
- 1348-0715
- ISSN-L（掲載誌）
- 0366-7022
- 本文の言語コード
- eng
- DOI
- 10.1246/cl.220172
- 国立国会図書館永続的識別子
- info:ndljp/pid/12998991
- コレクション（共通）
- コレクション（障害者向け資料：レベル1）
- コレクション（個別）
- 国立国会図書館デジタルコレクション > 電子書籍・電子雑誌 > その他
- 収集根拠
- オンライン資料収集制度
- 受理日（W3CDTF）
- 2023-09-27T16:20:01+09:00
- 保存日（W3CDTF）
- 2023-04-26
- 記録形式（IMT）
- application/pdf
- オンライン閲覧公開範囲
- 国立国会図書館内限定公開
- デジタル化資料送信
- 図書館・個人送信対象外
- 遠隔複写可否（NDL）
- 可
- 掲載誌（国立国会図書館永続的識別子）
- info:ndljp/pid/12998987
- 連携機関・データベース
- 国立国会図書館 : 国立国会図書館デジタルコレクション
- 要約等
- コレクション : 国立国会図書館デジタルコレクション > 電子書籍・電子雑誌 > その他
- DOI
- 10.1246/cl.220172
- オンライン閲覧公開範囲
- インターネット公開
- 関連情報（URI）
- 参照
- Prediction of Protein Function from Tertiary Structure of the Active Site in Heme Proteins by Convolutional Neural NetworkElucidation of the Correlation between Heme Distortion and Tertiary Structure of the Heme-Binding Pocket Using a Convolutional Neural NetworkHeterologous expression and biochemical comparison of two homologous SoxX proteins of endosymbiotic Candidatus Vesicomyosocius okutanii and free-living Hydrogenovibrio crunogenus from deep-sea environmentsStructure comparison of heme-binding sites in heme protein predicted by AlphaFold3 and AlphaFold2
- 参照
- Density functional study of porphyrin distortion effects on redox potential of hemeCATH – a hierarchic classification of protein domain structuresHighly accurate protein structure prediction for the human proteomeRole of Heme Distortion on Oxygen Affinity in Heme Proteins: The Protoglobin CasePDBj Mine: design and implementation of relational database interface for Protein Data Bank JapanStructural analysis of heme proteins: implications for design and predictionGlobal analysis of heme proteins elucidates the correlation between heme distortion and heme-binding pocketPrediction of the Iron–Sulfur Binding Sites in Proteins Using the Highly Accurate Three-Dimensional Models Calculated by AlphaFold and RoseTTAFoldAnalysis of Fluctuation in the Heme-Binding Pocket and Heme Distortion in Hemoglobin and MyoglobinPyDISH: database and analysis tools for heme porphyrin distortion in heme proteinsHighly accurate protein structure prediction with AlphaFoldBiopython: freely available Python tools for computational molecular biology and bioinformaticsThe Protein Data BankStatistical and quantum-chemical analysis of the effect of heme porphyrin distortion in heme proteins: Differences between oxidoreductases and oxygen carrier proteinsSCOP: a Structural Classification of Proteins databaseHeme proteins—Diversity in structural characteristics, function, and folding<i>Tannerella forsythia</i> Tfo belongs to <i>Porphyromonas gingivalis</i> HmuY-like family of proteins but differs in heme-binding propertiesComputational study of distortion effect of Fe-porphyrin found as a biological active siteProtein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework formatStructure of Myoglobin: A Three-Dimensional Fourier Synthesis at 2 Å. ResolutionPrediction of Monomeric and Dimeric Structures of CYP102A1 Using AlphaFold2 and AlphaFold Multimer and Assessment of Point Mutation Effect on the Efficiency of Intra- and Interprotein Electron TransferA Slam-dependent hemophore contributes to heme acquisition in the bacterial pathogen Acinetobacter baumanniiAlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy modelsCritical assessment of methods of protein structure prediction (CASP)—Round <scp>XIV</scp>Structure of Hæmoglobin: A Three-Dimensional Fourier Synthesis at 5.5-Å. Resolution, Obtained by X-Ray AnalysisMolecular basis for catalysis and substrate-mediated cellular stabilization of human tryptophan 2,3-dioxygenaseThe Janus nature of hemeHaem can bind to and inhibit mammalian calcium-dependent Slo1 BK channelsStructural basis for the heme transfer reaction in heme uptake machinery from CorynebacteriaDiversity and conservation of interactions for binding heme in b-type heme proteinsTheoretical Perspective on the Structure and Mechanism of Cytochrome P450 EnzymesDesign and synthesis of multi-haem proteinsToward the Synthesis of a Photosynthetic Reaction Center Maquette: A Cofacial Porphyrin Pair Assembled between Two Subunits of a Synthetic Four-Helix Bundle Multiheme ProteinMolecular insights into substrate recognition and catalysis by tryptophan 2,3-dioxygenaseCrystal Structure of Quinohemoprotein Amine Dehydrogenase from Pseudomonas putida2.6 Å resolution crystal structure of the bacterioferritin from <i>Azotobacter vinelandii</i>Structural and functional analyses of human tryptophan 2,3-dioxygenaseHemoprotein Bach1 regulates enhancer availability of heme oxygenase-1 geneMDTraj: A Modern Open Library for the Analysis of Molecular Dynamics TrajectoriesUnique Structure and Stability of HmuY, a Novel Heme-Binding Protein of Porphyromonas gingivalis
- 連携機関・データベース
- 国立情報学研究所 : CiNii Research
- 提供元機関・データベース
- 雑誌記事索引データベースCrossref科学研究費助成事業データベース科学研究費助成事業データベース科学研究費助成事業データベースCrossrefCrossrefCrossrefCrossref
- 書誌ID（NDLBibID）
- 12998991