Structure of heme-binding pocket in heme protein is generally rigid and can be predicted by AlphaFold2
Available in National Diet Library
Find on the publisher's website
NDL Digital Collections
Digital data available
Check on the publisher's website
DOI[10.1246/cl.220172]to the data of the same series
Holdings of Libraries in Japan
This page shows libraries in Japan other than the National Diet Library that hold the material.
Please contact your local library for information on how to use materials or whether it is possible to request materials from the holding libraries.
other
CiNii Research
Search ServiceDigitalYou can check the holdings of institutions and databases with which CiNii Research is linked at the site of CiNii Research.
Bibliographic Record
You can check the details of this material, its authority (keywords that refer to materials on the same subject, author's name, etc.), etc.
- Material Type
- 記事
- Author/Editor
- Hiroko X. KondoYusuke KanematsuYu Takano
- Publication, Distribution, etc.
- Publication Date
- 2022-05-11
- Publication Date (W3CDTF)
- 2022-05-11
- Periodical title
- Chemistry letters
- No. or year of volume/issue
- 51(7)
- Volume
- 51(7)
- ISSN (Periodical Title)
- 1348-0715
- ISSN-L (Periodical Title)
- 0366-7022
- Text Language Code
- eng
- DOI
- 10.1246/cl.220172
- Persistent ID (NDL)
- info:ndljp/pid/12998991
- Collection
- Collection (Materials For Handicapped People:1)
- Collection (particular)
- 国立国会図書館デジタルコレクション > 電子書籍・電子雑誌 > その他
- Acquisition Basis
- オンライン資料収集制度
- Date Accepted (W3CDTF)
- 2023-09-27T16:20:01+09:00
- Date Captured (W3CDTF)
- 2023-04-26
- Format (IMT)
- application/pdf
- Access Restrictions
- 国立国会図書館内限定公開
- Service for the Digitized Contents Transmission Service
- 図書館・個人送信対象外
- Availability of remote photoduplication service
- 可
- Periodical Title (URI)
- Periodical Title (Persistent ID (NDL))
- info:ndljp/pid/12998987
- Data Provider (Database)
- 国立国会図書館 : 国立国会図書館デジタルコレクション
- Summary, etc.
- コレクション : 国立国会図書館デジタルコレクション > 電子書籍・電子雑誌 > その他
- DOI
- 10.1246/cl.220172
- Access Restrictions
- インターネット公開
- Related Material (URI)
- Is Referenced By
- Prediction of Protein Function from Tertiary Structure of the Active Site in Heme Proteins by Convolutional Neural NetworkElucidation of the Correlation between Heme Distortion and Tertiary Structure of the Heme-Binding Pocket Using a Convolutional Neural NetworkHeterologous expression and biochemical comparison of two homologous SoxX proteins of endosymbiotic Candidatus Vesicomyosocius okutanii and free-living Hydrogenovibrio crunogenus from deep-sea environmentsStructure comparison of heme-binding sites in heme protein predicted by AlphaFold3 and AlphaFold2
- References
- Density functional study of porphyrin distortion effects on redox potential of hemeCATH – a hierarchic classification of protein domain structuresHighly accurate protein structure prediction for the human proteomeRole of Heme Distortion on Oxygen Affinity in Heme Proteins: The Protoglobin CasePDBj Mine: design and implementation of relational database interface for Protein Data Bank JapanStructural analysis of heme proteins: implications for design and predictionGlobal analysis of heme proteins elucidates the correlation between heme distortion and heme-binding pocketPrediction of the Iron–Sulfur Binding Sites in Proteins Using the Highly Accurate Three-Dimensional Models Calculated by AlphaFold and RoseTTAFoldAnalysis of Fluctuation in the Heme-Binding Pocket and Heme Distortion in Hemoglobin and MyoglobinPyDISH: database and analysis tools for heme porphyrin distortion in heme proteinsHighly accurate protein structure prediction with AlphaFoldBiopython: freely available Python tools for computational molecular biology and bioinformaticsThe Protein Data BankStatistical and quantum-chemical analysis of the effect of heme porphyrin distortion in heme proteins: Differences between oxidoreductases and oxygen carrier proteinsSCOP: a Structural Classification of Proteins databaseHeme proteins—Diversity in structural characteristics, function, and folding<i>Tannerella forsythia</i> Tfo belongs to <i>Porphyromonas gingivalis</i> HmuY-like family of proteins but differs in heme-binding propertiesComputational study of distortion effect of Fe-porphyrin found as a biological active siteProtein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework formatStructure of Myoglobin: A Three-Dimensional Fourier Synthesis at 2 Å. ResolutionPrediction of Monomeric and Dimeric Structures of CYP102A1 Using AlphaFold2 and AlphaFold Multimer and Assessment of Point Mutation Effect on the Efficiency of Intra- and Interprotein Electron TransferA Slam-dependent hemophore contributes to heme acquisition in the bacterial pathogen Acinetobacter baumanniiAlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy modelsCritical assessment of methods of protein structure prediction (CASP)—Round <scp>XIV</scp>Structure of Hæmoglobin: A Three-Dimensional Fourier Synthesis at 5.5-Å. Resolution, Obtained by X-Ray AnalysisMolecular basis for catalysis and substrate-mediated cellular stabilization of human tryptophan 2,3-dioxygenaseThe Janus nature of hemeHaem can bind to and inhibit mammalian calcium-dependent Slo1 BK channelsStructural basis for the heme transfer reaction in heme uptake machinery from CorynebacteriaDiversity and conservation of interactions for binding heme in b-type heme proteinsTheoretical Perspective on the Structure and Mechanism of Cytochrome P450 EnzymesDesign and synthesis of multi-haem proteinsToward the Synthesis of a Photosynthetic Reaction Center Maquette: A Cofacial Porphyrin Pair Assembled between Two Subunits of a Synthetic Four-Helix Bundle Multiheme ProteinMolecular insights into substrate recognition and catalysis by tryptophan 2,3-dioxygenaseCrystal Structure of Quinohemoprotein Amine Dehydrogenase from Pseudomonas putida2.6 Å resolution crystal structure of the bacterioferritin from <i>Azotobacter vinelandii</i>Structural and functional analyses of human tryptophan 2,3-dioxygenaseHemoprotein Bach1 regulates enhancer availability of heme oxygenase-1 geneMDTraj: A Modern Open Library for the Analysis of Molecular Dynamics TrajectoriesUnique Structure and Stability of HmuY, a Novel Heme-Binding Protein of Porphyromonas gingivalis
- Data Provider (Database)
- 国立情報学研究所 : CiNii Research
- Original Data Provider (Database)
- 雑誌記事索引データベースCrossref科学研究費助成事業データベース科学研究費助成事業データベース科学研究費助成事業データベースCrossrefCrossrefCrossrefCrossref
- Bibliographic ID (NDL)
- 12998991